3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02211

Details:

PFam ID : PF02211

PFam Domain Description : Nitrile hydratase beta subunit

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 226

Average sequence length: 152.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02211	P96453_RHORH_23_147	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02211	P96453_RHORH_23_147	100

Sequence based PCA Plot of the family - PF02211 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=164 Length=8
Motif3 Start=142 Length=8
Motif4 Start=98 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay