3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02210

Details:

PFam ID : PF02210

PFam Domain Description : Laminin G domain

Number of Sequence in 50% Dataset : 634

Number of Sequence in Full Dataset : 1628

Average sequence length: 126.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02210	F1S3G7_PIG_1_74	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02210	A7RQ19_NEMVE_2915_3088	99.5

Sequence based PCA Plot of the family - PF02210 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=2 Length=8
Motif3 Start=94 Length=8
Motif4 Start=119 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay