3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02209

Details:

PFam ID : PF02209

PFam Domain Description : Villin headpiece domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 207

Average sequence length: 35.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02209	A2E8S8_TRIVA_973_995	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02209	B0EDM4_ENTDI_714_749	100

Sequence based PCA Plot of the family - PF02209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay