Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02205
Details:

PFam ID : PF02205

PFam Domain Description : WH2 motif

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 379

Average sequence length: 26.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02205E9GG09_DAPPU_393_41920.7
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02205A0CS42_PARTE_344_37184
Sequence based PCA Plot of the family - PF02205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay