3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02204

Details:

PFam ID : PF02204

PFam Domain Description : Vacuolar sorting protein 9 (VPS9) domain

Number of Sequence in 50% Dataset : 217

Number of Sequence in Full Dataset : 509

Average sequence length: 105.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02204	C4YCK5_CLAL4_215_407	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02204	C4Q8T9_SCHMA_237_401	100

Sequence based PCA Plot of the family - PF02204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=8
Motif2 Start=16 Length=8
Motif3 Start=112 Length=8
Motif4 Start=72 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay