3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02203

Details:

PFam ID : PF02203

PFam Domain Description : Tar ligand binding domain homologue

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 696

Average sequence length: 165.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02203	B9TN33_RICCO_1_84	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02203	B9BQN2_9BURK_16_217	92.0

Sequence based PCA Plot of the family - PF02203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay