3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02190

Details:

PFam ID : PF02190

PFam Domain Description : ATP-dependent protease La (LON) domain

Number of Sequence in 50% Dataset : 519

Number of Sequence in Full Dataset : 2094

Average sequence length: 201.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02190	B5DHU9_DROPS_42_125	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02190	D5Q7I1_CLODI_3_90	99.7

Sequence based PCA Plot of the family - PF02190 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=247 Length=8
Motif2 Start=155 Length=8
Motif3 Start=19 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay