3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02189

Details:

PFam ID : PF02189

PFam Domain Description : Immunoreceptor tyrosine-based activation motif

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 30

Average sequence length: 20.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02189	D3XDI2_AMBME_138_158	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02189	Q90XD6_PLEWA_143_162	44

Sequence based PCA Plot of the family - PF02189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay