3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02188

Details:

PFam ID : PF02188

PFam Domain Description : GoLoco motif

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 141

Average sequence length: 22.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02188	B3RND5_TRIAD_426_448	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02188	B3RND5_TRIAD_453_475	98.5

Sequence based PCA Plot of the family - PF02188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay