3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02187

Details:

PFam ID : PF02187

PFam Domain Description : Growth-Arrest-Specific Protein 2 Domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 101

Average sequence length: 61.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02187	F2U1P6_9EUKA_643_690	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02187	F2UCD1_9EUKA_1472_1545	100

Sequence based PCA Plot of the family - PF02187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay