3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02186

Details:

PFam ID : PF02186

PFam Domain Description : TFIIE beta subunit core domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 71

Average sequence length: 68.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02186	E4XMR9_OIKDI_44_119	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02186	Q8SRS3_ENCCU_44_108	97.1

Sequence based PCA Plot of the family - PF02186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay