3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02185

Details:

PFam ID : PF02185

PFam Domain Description : Hr1 repeat

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 294

Average sequence length: 69.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02185	F0ZM88_DICPU_284_358	7.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02185	E9CI17_9EUKA_394_467	96.2

Sequence based PCA Plot of the family - PF02185 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay