3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02184

Details:

PFam ID : PF02184

PFam Domain Description : HAT (Half-A-TPR) repeat

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 116

Average sequence length: 31.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02184	B7Q836_IXOSC_109_130	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02184	D8LLC4_ECTSI_186_217	100

Sequence based PCA Plot of the family - PF02184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay