3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02183

Details:

PFam ID : PF02183

PFam Domain Description : Homeobox associated leucine zipper

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 255

Average sequence length: 43.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02183	A3BU67_ORYSJ_98_120	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02183	A9NYL7_PICSI_126_169	93.3

Sequence based PCA Plot of the family - PF02183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=12 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay