3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02182

Details:

PFam ID : PF02182

PFam Domain Description : YDG/SRA domain

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 231

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02182	D7SH82_VITVI_5_74	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02182	B2KD14_ELUMP_18_153	100

Sequence based PCA Plot of the family - PF02182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=147 Length=11
Motif3 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay