3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02181

Details:

PFam ID : PF02181

PFam Domain Description : FHA domain

Number of Sequence in 50% Dataset : 349

Number of Sequence in Full Dataset : 780

Average sequence length: 312.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02181	Q4JF58_TETTH_380_764	79.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02181	F0XYP8_9STRA_1547_1776	100

Sequence based PCA Plot of the family - PF02181 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=364 Length=8
Motif2 Start=350 Length=8
Motif3 Start=8 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay