3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02179

Details:

PFam ID : PF02179

PFam Domain Description : BAG domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 243

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02179	C4QXE7_PICPG_100_212	92

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02179	A8Q9K6_MALGO_191_294	96.6

Sequence based PCA Plot of the family - PF02179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay