3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02178

Details:

PFam ID : PF02178

PFam Domain Description : AT hook motif

Number of Sequence in 50% Dataset : 699

Number of Sequence in Full Dataset : 699

Average sequence length: 12.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02178	B4R7F3_DROSI_13_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02178	B9S401_RICCO_240_252	68

Sequence based PCA Plot of the family - PF02178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay