3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02177

Details:

PFam ID : PF02177

PFam Domain Description : Amyloid A4 N-terminal heparin-binding

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 49

Average sequence length: 94.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02177	B4R7F3_DROSI_13_79	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02177	C0JV68_PARLI_38_143	100

Sequence based PCA Plot of the family - PF02177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay