3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02176

Details:

PFam ID : PF02176

PFam Domain Description : TRAF-type zinc finger

Number of Sequence in 50% Dataset : 270

Number of Sequence in Full Dataset : 552

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02176	C1MQ77_MICPC_219_285	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02176	A0D615_PARTE_266_300	100

Sequence based PCA Plot of the family - PF02176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=14
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay