3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02173

Details:

PFam ID : PF02173

PFam Domain Description : pKID domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 59

Average sequence length: 40.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02173	Q9TZB8_CAEEL_113_202	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02173	E9PZB1_MOUSE_46_76	98.2

Sequence based PCA Plot of the family - PF02173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay