3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02169

Details:

PFam ID : PF02169

PFam Domain Description : LPP20 lipoprotein

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 229

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02169	A0L2W0_SHESA_51_155	67.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02169	Q1ZC34_9GAMM_33_137	62

Sequence based PCA Plot of the family - PF02169 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay