3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02167

Details:

PFam ID : PF02167

PFam Domain Description : Cytochrome C1 family

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 492

Average sequence length: 201.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02167	A1AV56_RUTMC_28_120	73.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02167	Q0C5B1_HYPNA_36_317	100

Sequence based PCA Plot of the family - PF02167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=213 Length=8
Motif3 Start=244 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay