3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02165

Details:

PFam ID : PF02165

PFam Domain Description : Wilm's tumour protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 23

Average sequence length: 206.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02165	C3Z1H0_BRAFL_3_188	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02165	O42223_TRASC_1_209	100

Sequence based PCA Plot of the family - PF02165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay