3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02162

Details:

PFam ID : PF02162

PFam Domain Description : XYPPX repeat (two copies)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 28

Average sequence length: 13.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02162	Q3UQA6_MOUSE_1_41	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02162	A9SRR1_PHYPA_81_93	92.5

Sequence based PCA Plot of the family - PF02162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay