3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02160

Details:

PFam ID : PF02160

PFam Domain Description : Cauliflower mosaic virus peptidase (A3)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 44

Average sequence length: 174.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02160	Q93YC0_TOBAC_2_88	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02160	B2D1N0_9VIRU_8_220	97.6

Sequence based PCA Plot of the family - PF02160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=99 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay