3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02159

Details:

PFam ID : PF02159

PFam Domain Description : Oestrogen receptor

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 68

Average sequence length: 124.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02159	Q5C8S5_HUMAN_67_94	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02159	ESR1_ICTPU_37_173	98.5

Sequence based PCA Plot of the family - PF02159 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay