3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02156

Details:

PFam ID : PF02156

PFam Domain Description : Glycosyl hydrolase family 26

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 414

Average sequence length: 229.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02156	E0RLJ9_PAEP6_1_123	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02156	C9RMW2_FIBSS_156_532	100

Sequence based PCA Plot of the family - PF02156 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=211 Length=17
Motif2 Start=78 Length=11
Motif3 Start=340 Length=8
Motif4 Start=279 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay