3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02154

Details:

PFam ID : PF02154

PFam Domain Description : Flagellar biosynthesis protein, FliO

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 375

Average sequence length: 188.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02154	B8KP53_9GAMM_43_229	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02154	D7GSQ4_9FIRM_44_241	100

Sequence based PCA Plot of the family - PF02154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=178 Length=11
Motif3 Start=1 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay