3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02149

Details:

PFam ID : PF02149

PFam Domain Description : Kinase associated domain 1

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 139

Average sequence length: 45.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02149	A2D7C9_TRIVA_411_449	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02149	E2AQ24_9HYME_880_922	100

Sequence based PCA Plot of the family - PF02149 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay