3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02148

Details:

PFam ID : PF02148

PFam Domain Description : Zn-finger in ubiquitin-hydrolases and other protein

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 748

Average sequence length: 68.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02148	E9BWW4_9EUKA_130_269	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02148	Q0CL11_ASPTN_26_121	99.8

Sequence based PCA Plot of the family - PF02148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay