3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02142

Details:

PFam ID : PF02142

PFam Domain Description : MGS-like domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 2548

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02142	F0VL44_NEOCA_1532_1605	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02142	B0C5A3_ACAM1_16_109	91.9

Sequence based PCA Plot of the family - PF02142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=97 Length=8
Motif2 Start=12 Length=21
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay