3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02141

Details:

PFam ID : PF02141

PFam Domain Description : DENN (AEX-3) domain

Number of Sequence in 50% Dataset : 213

Number of Sequence in Full Dataset : 463

Average sequence length: 171.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02141	D7FYV2_ECTSI_4078_4141	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02141	E2RKE4_CANFA_313_407	100

Sequence based PCA Plot of the family - PF02141 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=203 Length=8
Motif3 Start=186 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay