3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02140

Details:

PFam ID : PF02140

PFam Domain Description : Galactose binding lectin domain

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 496

Average sequence length: 78.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02140	A8WSJ9_CAEBR_52_166	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02140	E0CPF3_VITVI_8_53	99.5

Sequence based PCA Plot of the family - PF02140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=59 Length=14
Motif3 Start=10 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay