3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02138

Details:

PFam ID : PF02138

PFam Domain Description : Beige/BEACH domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 511

Average sequence length: 239.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02138	A7AVL4_BABBO_358_670	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02138	A2DQX6_TRIVA_1914_2029	100

Sequence based PCA Plot of the family - PF02138 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=9 Length=11
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay