3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02136

Details:

PFam ID : PF02136

PFam Domain Description : Nuclear transport factor 2 (NTF2) domain

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 607

Average sequence length: 116.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02136	A5ANR1_VITVI_15_180	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02136	Q16RU7_AEDAE_20_120	86

Sequence based PCA Plot of the family - PF02136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=54 Length=8
Motif2 Start=165 Length=8
Motif3 Start=4 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay