3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02130

Details:

PFam ID : PF02130

PFam Domain Description : Uncharacterized protein family UPF0054

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 1420

Average sequence length: 141.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02130	A8J800_CHLRE_68_169	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02130	C8PJQ0_9PROT_4_195	100

Sequence based PCA Plot of the family - PF02130 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=126 Length=22
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay