3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02129

Details:

PFam ID : PF02129

PFam Domain Description : X-Pro dipeptidyl-peptidase (S15 family)

Number of Sequence in 50% Dataset : 241

Number of Sequence in Full Dataset : 880

Average sequence length: 255.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02129	A1SDE1_NOCSJ_57_165	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02129	D6ZAB8_SEGRD_147_515	100

Sequence based PCA Plot of the family - PF02129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=1 Length=14
Motif3 Start=84 Length=8
Motif4 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay