3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02128

Details:

PFam ID : PF02128

PFam Domain Description : Fungalysin metallopeptidase (M36)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 145

Average sequence length: 344.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02128	A1SHN7_NOCSJ_456_851	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02128	A1SHN7_NOCSJ_456_851	100

Sequence based PCA Plot of the family - PF02128 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=92 Length=8
Motif2 Start=14 Length=8
Motif3 Start=31 Length=8
Motif4 Start=221 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay