3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02123

Details:

PFam ID : PF02123

PFam Domain Description : Viral RNA-directed RNA-polymerase

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 200

Average sequence length: 322.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02123	E2JB48_TASV1_2_63	81.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02123	E2RWR1_9VIRU_621_863	56

Sequence based PCA Plot of the family - PF02123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=317 Length=8
Motif2 Start=89 Length=8
Motif3 Start=236 Length=8
Motif4 Start=154 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay