3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02120

Details:

PFam ID : PF02120

PFam Domain Description : Listeria-Bacteroides repeat domain (List_Bact_rpt)

Number of Sequence in 50% Dataset : 288

Number of Sequence in Full Dataset : 806

Average sequence length: 84.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02120	Q3A5K2_PELCD_237_303	70.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02120	D0KXW4_HALNC_327_426	100

Sequence based PCA Plot of the family - PF02120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay