3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02119

Details:

PFam ID : PF02119

PFam Domain Description : Anti-sigma-28 factor, FlgM

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 455

Average sequence length: 327.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02119	B9PAJ7_POPTR_212_287	69.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02119	F2B1Y1_RHOBA_34_379	100

Sequence based PCA Plot of the family - PF02119 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=119 Length=14
Motif3 Start=26 Length=17
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay