3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02116

Details:

PFam ID : PF02116

PFam Domain Description : Fungal pheromone mating factor STE2 GPCR

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 60

Average sequence length: 266.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02116	B6IJD6_CAEBR_305_391	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02116	Q6BYC0_DEBHA_9_297	100

Sequence based PCA Plot of the family - PF02116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=223 Length=8
Motif2 Start=132 Length=8
Motif3 Start=233 Length=11
Motif4 Start=281 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay