3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02113

Details:

PFam ID : PF02113

PFam Domain Description : D-Ala-D-Ala carboxypeptidase 3 (S13) family

Number of Sequence in 50% Dataset : 355

Number of Sequence in Full Dataset : 1051

Average sequence length: 284.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02113	C0BK36_9BACT_22_84	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02113	D3HMG6_LEGLN_43_535	100

Sequence based PCA Plot of the family - PF02113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay