3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02112

Details:

PFam ID : PF02112

PFam Domain Description : cAMP phosphodiesterases class-II

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 140

Average sequence length: 240.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02112	D8PW25_SCHCM_45_361	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02112	B9WHF2_CANDC_35_420	100

Sequence based PCA Plot of the family - PF02112 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay