3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02109

Details:

PFam ID : PF02109

PFam Domain Description : DAD family

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 157

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02109	O67532_AQUAE_37_212	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02109	D2VEM7_NAEGR_26_138	100

Sequence based PCA Plot of the family - PF02109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=21
Motif2 Start=1 Length=8
Motif3 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay