3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02108

Details:

PFam ID : PF02108

PFam Domain Description : Flagellar FliJ protein

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 599

Average sequence length: 131.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02108	O67532_AQUAE_37_212	71.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02108	O67532_AQUAE_37_212	100

Sequence based PCA Plot of the family - PF02108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=35 Length=11
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay