3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02107

Details:

PFam ID : PF02107

PFam Domain Description : Flagellar P-ring protein

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 482

Average sequence length: 184.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02107	B9TLF8_RICCO_22_125	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02107	D9SEY2_GALCS_60_258	100

Sequence based PCA Plot of the family - PF02107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=59 Length=8
Motif3 Start=15 Length=14
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay