3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02106

Details:

PFam ID : PF02106

PFam Domain Description : Fanconi anaemia group C protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 21

Average sequence length: 241.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02106	C3YM01_BRAFL_2_292	7.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02106	Q5F3H0_CHICK_1_559	100

Sequence based PCA Plot of the family - PF02106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay