3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02102

Details:

PFam ID : PF02102

PFam Domain Description : Deuterolysin metalloprotease (M35) family

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 141

Average sequence length: 287.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02102	B8NMN1_ASPFN_1_170	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02102	E9EK46_METAR_39_255	100

Sequence based PCA Plot of the family - PF02102 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=108 Length=8
Motif2 Start=313 Length=8
Motif3 Start=279 Length=8
Motif4 Start=337 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay